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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGGAAGAGAGATCTTACAAAAGATTTGCTGAAGCATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatctatacaaactttaacaccttgatccgagcggaagtattgattcgtggtctgatctttgcgttgaagtgttcatcggagaaaagtctcaaattttttgattgtacgtacaatgtccgagtacatagtcagttaaattacgttttctgcggaaatatgcag

Basic information

species Physcomitrella patens
transcript PP1S35_276V6.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184259|gb|FC360500.1|FC360500
EST:     CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|162257287|gb|FC433370.1|FC433370
EST:     CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|162257286|gb|FC433369.1|FC433369
EST:     CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|37831373|gb|BJ589385.1|BJ589385
EST:     CATGCCTTGAAACTACTATNGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|162184258|gb|FC360499.1|FC360499
EST:     ATGCCTTGAAACTACTATTGTG-TGNTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: ATGCCTTGAAACTACTATTGTGTTG-TATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|162198920|gb|FC372947.1|FC372947
EST:     CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
EST: gi|100412907|gb|BY992494.1|BY992494
EST:     CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAG                         AAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA
genomic: CATGCCTTGAAACTACTATTGTGTTGTATGTGGACCGACTTCTTACCCAGgtttgaaatc ... aaatatgcagAAACAGTACATAAAGGAAGAAACTTTGAAGAGGCTCGAAGTTGATGAAGAA