1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AGGGGATGAAGGGGAGGAAATCACCGAATTTTTCAGTTATGATCGCCTGAAAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtcacaccaaaactcattgcacagttgtttccaagagtaacgaatgttaattcgttggcaatgaagtgctgctagtagccagtggttttgaatt...
species | Physcomitrella patens |
transcript | PP1S299_6V6.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162195995|gb|FC372686.1|FC372686
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|67570136|gb|BJ942960.1|BJ942960
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162174320|gb|FC350391.1|FC350391
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162177371|gb|FC352904.1|FC352904
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162202148|gb|FC377536.1|FC377536
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162269688|gb|FC445608.1|FC445608
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162195994|gb|FC372685.1|FC372685
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162174319|gb|FC350390.1|FC350390
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGCEST: gi|162202149|gb|FC377537.1|FC377537
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
EST: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAG GCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
genomic: AAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtca ... tctcttgtagGCTTACTTATCTCCCGAAGATTTTGAGAAGCTGTTCGGAATGCCCAGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGGATGAAGGGGAGGAAATCACCGAATTTTTCAGTTATGATCGCCTGAAAGCATCGCCCACGGATCCTGATTTAAAAATAAATGTAAAAAGAAAAGAGgtacgtgtcacaccaaaactcattgcacagttgtttccaagagtaacgaatgttaattcgttggcaatgaagtgctgctagtagccagtggttttgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA