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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcatagtgggatggattttcctaatgtattgtcttaatatcttctaataagctagacaatggatggtctttctaggagatgtttgactgaaagatgtatttgatggatttcacag

Basic information

species Physcomitrella patens
transcript PP1S243_63V6.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157188|gb|FC332822.1|FC332822
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162168671|gb|FC343933.1|FC343933
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162239261|gb|FC416517.1|FC416517
EST:     CAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162149693|gb|FC326744.1|FC326744
EST:     AAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: AAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|37839801|gb|BJ597809.1|BJ597809
EST:     GAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATNTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: GAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162248787|gb|FC422014.1|FC422014
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162168672|gb|FC343934.1|FC343934
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162174016|gb|FC350531.1|FC350531
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162248786|gb|FC422013.1|FC422013
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
EST: gi|162149694|gb|FC326745.1|FC326745
EST:     CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAG                         ATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT
genomic: CCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcata ... gatttcacagATTAATCAAAGAGCAGCTGAATCACTAGCAGATCCACAAGAGTACCCCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACCGTATACCAGAAGCAGCTTTCATGGCTCGTACATACACACCCAGTGAAGTCAGTAATGTTGTTGCGTTGTGGCGAAATGATCTAAAGAAGgtgaatcatagtgggatggattttcctaatgtattgtcttaatatcttctaataagctagacaatggatggtctttctaggagatgtttgactgaaagatgtatttgatggatttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG