1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAAGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaattttcttccttctgctaatatcttggggactattttatttactctataatgggttttcctaaatctcggatacaccaagtttagagccgaag...
species | Physcomitrella patens |
transcript | PP1S187_100V6.2 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGG GAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTCEST: gi|162202221|gb|FC377570.1|FC377570
genomic: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaatt ... ttggttgcagGAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
EST: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGG GAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTCEST: gi|37836254|gb|BJ594262.1|BJ594262
genomic: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaatt ... ttggttgcagGAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
EST: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGG GAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTCEST: gi|18336786|gb|BJ168809.1|BJ168809
genomic: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaatt ... ttggttgcagGAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
EST: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGG GAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTCEST: gi|162257800|gb|FC433998.1|FC433998
genomic: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaatt ... ttggttgcagGAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
EST: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGG GAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
genomic: AGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaatt ... ttggttgcagGAATTGGACACCAATTTTTATTGACTTTGGGAGTTGATGCCACAATTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAAGAGAAAGCGTTGTAAAGAAATTCTGCGAGTTTTACAGCAAGCTGCTTGGgtattaaattttcttccttctgctaatatcttggggactattttatttactctataatgggttttcctaaatctcggatacaccaagtttagagccgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT