1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GATAGCATCGACCTTGTAGCTGGTTCTTATGAAGTCGGCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtcatctcttctcaatcttcgttgtatgaattgaaaagagttatgccttattatttcaagaagttgccaagagtttgttataatttttactcattttgtttttattgcag
species | Physcomitrella patens |
transcript | PP1S55_207V6.2 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37826354|gb|BJ584366.1|BJ584366
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|162194974|gb|FC370586.1|FC370586
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37846682|gb|BJ604690.1|BJ604690
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|162194973|gb|FC370585.1|FC370585
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37841206|gb|BJ599214.1|BJ599214
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37840603|gb|BJ598611.1|BJ598611
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: NCGGAGGAGATTCCTCACGTCTCCAGATNACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37832380|gb|BJ590392.1|BJ590392
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATTEST: gi|37832822|gb|BJ590834.1|BJ590834
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
EST: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCG TTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
genomic: GCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtca ... tttattgcagTTGCCGGGTGCTTTAGTTGCATTGATTGCGGGTGCTTACTTCACCAGTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGCATCGACCTTGTAGCTGGTTCTTATGAAGTCGGCGGAGGAGATTCCTCACGTCTCCAGATTACCTTGATAGAGACTGTTGCGgtatgagtcatctcttctcaatcttcgttgtatgaattgaaaagagttatgccttattatttcaagaagttgccaagagtttgttataatttttactcattttgtttttattgcag
- - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT