1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATAAGTGTGATGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttctttgtggttcctccatcatattctttgttggcattgttgcacaagttcagactcattctttactgtaattgatacctgtaaatctattgtagtcaataacaccatatactgtggactgacgtaacaatttatttatgttacag
species | Physcomitrella patens |
transcript | PP1S414_22V6.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162154533|gb|FC330743.1|FC330743
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|37846088|gb|BJ604096.1|BJ604096
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: CCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162275984|gb|FC452052.1|FC452052
genomic: CCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162255375|gb|FC432101.1|FC432101
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162192599|gb|FC370646.1|FC370646
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162196103|gb|FC372742.1|FC372742
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162192598|gb|FC370645.1|FC370645
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: CACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162154532|gb|FC330742.1|FC330742
genomic: CACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|37827917|gb|BJ585929.1|BJ585929
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|162198495|gb|FC375330.1|FC375330
genomic: TCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGAEST: gi|37824938|gb|BJ583004.1|BJ583004
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
EST: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATG TCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
genomic: TGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttct ... tatgttacagTCGGCAACGGTTTCTTTGGGACTTATTGGAGCTGGGACTAATAATGCCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGTGTGATGGATACACTGAGCCGTCTCACCCACGACAGTGATTCTGAAGTAGCTATGgtatttttctttgtggttcctccatcatattctttgttggcattgttgcacaagttcagactcattctttactgtaattgatacctgtaaatctattgtagtcaataacaccatatactgtggactgacgtaacaatttatttatgttacag
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG