1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATTAGTGTAATGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgttttcttttatccgtgttcatcattgttcctaccaacatttgcgcatgaaattatagttgttctgtggattacatggtaattgtggttttaacctaaacaagtggtcgatgagtttttgattttggtatacactgttggtttgttctgacacaacactgttcatatcacag
species | Physcomitrella patens |
transcript | PP1S3_553V6.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|162176023|gb|FC351024.1|FC351024
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|162176009|gb|FC351023.1|FC351023
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: NGGATACANTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|162280079|gb|FC456473.1|FC456473
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|162163326|gb|FC339652.1|FC339652
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|37824468|gb|BJ582534.1|BJ582534
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGAEST: gi|162186176|gb|FC362108.1|FC362108
genomic: TGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
EST: AGCCACGACAGTGATTCTGAAGTGGCCATG TCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
genomic: AGCCACGACAGTGATTCTGAAGTGGCCATGgtattgtttt ... catatcacagTCGGCTACAATTTCTTTGGGACTTATAGGAGCGGGAACCAATAACGCCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGTGTAATGGATACACTGAGCCGTCTCAGCCACGACAGTGATTCTGAAGTGGCCATGgtattgttttcttttatccgtgttcatcattgttcctaccaacatttgcgcatgaaattatagttgttctgtggattacatggtaattgtggttttaacctaaacaagtggtcgatgagtttttgattttggtatacactgttggtttgttctgacacaacactgttcatatcacag
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG