1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGAGACTTTGCTTTATACCATCAGTCCCGAGGATGTTCCGATTCAAATTGGATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgctgacgttgttcttgaagcattttcaactagtctacataaagtgcatatgaaatagttgctttaacagctccgaataacatatttgtttcg...
species | Physcomitrella patens |
transcript | PP1S31_198V6.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGG GTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACCEST: gi|162183321|gb|FC359236.1|FC359236
genomic: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgc ... aattttacagGTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACC
EST: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGG GTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACCEST: gi|162199396|gb|FC373737.1|FC373737
genomic: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgc ... aattttacagGTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACC
EST: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGG GTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACCEST: gi|162183320|gb|FC359235.1|FC359235
genomic: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgc ... aattttacagGTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACC
EST: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGG GTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACC
genomic: GATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgc ... aattttacagGTAGAGAAGGCCTTACCAGCGATGTATAAGCGTATGCAGAAGCATCTTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGACTTTGCTTTATACCATCAGTCCCGAGGATGTTCCGATTCAAATTGGATATACAAAGATGGACTTGCGAAAGACATTGAAGGCTAGTCTTTCTGGGgtacgtacgctgacgttgttcttgaagcattttcaactagtctacataaagtgcatatgaaatagttgctttaacagctccgaataacatatttgtttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG