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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag

Basic information

species Physcomitrella patens
transcript PP1S317_10V6.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 5'ss of exon 8
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
  | || ||||| |||||||||||  | || ||||||||||| || ||||| || || || || ||||| || || |||||||| || |||||||||||||||  || |  |       |  ||  || |  || |    |  | | ||  | |  || | | |||    | || | |||    |||   ||     |||  |   ||                                                                      
TCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTAATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATTTACAGgttcccctctct----ctctctctctctcatatatgggttttcaatttt--tgtcttgaaagagtttctcatatttcgggtt--tttgaatgtgtgatgtcatgctag----------------------------------------------------------------------

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 19
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgt--ttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
| | || || || || || || ||| |||| || ||||||||||| ||||||||||| || |||||||| || ||||||||||| || |||||  | |||||  |   |   || || | |  | ||  | |   || ||  ||  || ||  | |    | |  |||   |||                                                                                                          
CCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAATCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGgtattcagctgatttaattttatcattaatcaacaaaatatttggtgt-ttactgttacttctatgttttttag----------------------------------------------------------------------------------------------------------

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 19
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagta-ttgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
| | || || || || || || ||| |||| || || |||||||| ||||||||||| || |||||||| || ||||||||||| || |||||  | ||||| | |  |      || | |  ||  ||   | | | |||||| || ||| |      | |   ||   |   | || |                                                                                                   
CCTTCTTTCAACACGGGCAGGAGGTCTGGGTATCAACCTTGCTACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGgtattcagct----gatataattttatta---ttaatccatgaaatagttggtgcttactgttacttttatgtcttttag---------------------------------------------------------------------------------------------------

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 20
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
  | || || ||||| ||||||||  |||| || ||||| ||||| || || || ||| ||||||||||||| ||||||||||| || |||||  | |||||||  || |  | ||  ||   || |||  ||  |   || |    || |||     | |  | |||    ||         ||| | |                                                                                        
TCTTCTTTCGACCCGAGCTGGTGGACTGGGTATCAATCTGGCTACTGCTGATACAGTCGTTATATTTGACTCTGATTGGAATCCACAAAATGACCTGCAGgttttgcctccaataaaatt---tttctacctttggattattactctttaatactaaatgt-tgataatggaatcccaaccctattatatcag-------------------------------------------------------------------------------------

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 19
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
| | || || ||||||||||||||  |||| ||||| ||||| || |||||||| || ||||||||||| || || ||||||||||| ||||| ||||||||||   |       ||||      ||| ||||  || |||| ||| | | |||| | |   |  | | ||  | ||   ||  || ||    |                                                                                    
CCTCCTTTCAACCCGTGCTGGTGGCCTGGGCATTAACCTTGCAACTGCAGACACAGTTATTATATTTGATTCTGACTGGAATCCCCAAAATGACTTACAGgttttgact----ggatgtc-----ccttagtttggt-catgtagt-tggttatatttttctcaatta-tacttattat-agctttatgcactag-----------------------------------------------------------------------------------

upper sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 20
lower sequence: EFJ29460 (Selaginella moellendorffii), 5'ss of exon 18
CTTACTATCTACCCGTGCTGGTGGTTTGGGAATTAATCTTGCTACCGCAGACACTGTCATTATATTTGACTCGGATTGGAATCCCCAGAATGATTTACAGgtttgcccccttaaaatgttaccttcctaagttaagtacatgaagtattgatatactgtatgcgttaagtagatgttgggagaattttgttgcaaactgttgttgcagctcttttgccgcgggcttgaacgttttgttacgaaacaagtgcatgtgctgagaggtttgtttcctgcag
| |||| || ||  | || || ||  | ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||||  | || ||  |    |||    |   |  |||  ||||| | | || |   |||  |                                                                                                                               
CCTACTTTCAACAAGAGCGGGGGGCCTTGGAATCAATCTTGCTACTGCAGACACTGTGATTATCTTTGATTCTGATTGGAATCCACAGAATGACCTTCAAgtaagttttcttt---ttgaaaattcacaagtttattccacgttctatgtag------------------------------------------------------------------------------------------------------------------------------