1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TGAAACGGGCCTTGAGGATTGCCAACGCTGCACAGCAGATGTCTAGTGCGACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggcacatctcaagtggacaggacggtgtgggtgtctggtgtacatggaatcgtggaaggtgatgttttctgtgtttggggttgagttatggaaggttcacagctgtgtggggttgggtgtgtggtttgcag
species | Physcomitrella patens |
transcript | PP1S313_104V6.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|67697332|gb|BJ957565.1|BJ957565
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|162150618|gb|FC326474.1|FC326474
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|37829191|gb|BJ587203.1|BJ587203
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|162186324|gb|FC361632.1|FC361632
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|162273021|gb|FC449152.1|FC449152
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|162193997|gb|FC371810.1|FC371810
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCATEST: gi|162273020|gb|FC449151.1|FC449151
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
EST: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAA GTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
genomic: ACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggc ... tggtttgcagGTATCTGTATTACTTTGAGAAAGGCAACACCCAAGTTACAAGCACGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAACGGGCCTTGAGGATTGCCAACGCTGCACAGCAGATGTCTAGTGCGACCCGAGGAAGCAATGGGCCCATGACACTTTTTGTGGAGATTCTGAACAAgtgagtcggcacatctcaagtggacaggacggtgtgggtgtctggtgtacatggaatcgtggaaggtgatgttttctgtgtttggggttgagttatggaaggttcacagctgtgtggggttgggtgtgtggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT