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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaaattttgggattcattttgaattttcttttgtgtatggccatgtttgatgatttctacttggtgtagtgttcgttggaatattttgtgccttcttacatcaaggattgttatgttgatatcctttag

Basic information

species Physcomitrella patens
transcript PP1S187_100V6.2
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828396|gb|BJ586408.1|BJ586408
EST:     AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG                         GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
genomic: AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaa ... tatcctttagGGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
EST: gi|162202221|gb|FC377570.1|FC377570
EST:     AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG                         GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
genomic: AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaa ... tatcctttagGGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
EST: gi|37836254|gb|BJ594262.1|BJ594262
EST:     AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG                         GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
genomic: AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaa ... tatcctttagGGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
EST: gi|18336786|gb|BJ168809.1|BJ168809
EST:     AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG                         GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
genomic: AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaa ... tatcctttagGGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
EST: gi|162257800|gb|FC433998.1|FC433998
EST:     AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAG                         GGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA
genomic: AACCACGTGAAAAGGGAACTTCATACTGTATTTATCAGAAAGTTGTACAGgtgatttaaa ... tatcctttagGGAGAATTTGTTTGAGGAGATGCTTCAAGAAAAGGAAGATATAGCCGTTAA