1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
AGATGGAGTACACAGATAATGACAAGCCTTATCCTCGAGGAGAGATTTGTGTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttcatgttctcttcacgcgtctttggatatacgttgtcatacctaagtatcttcgatgatttgaattgtgaacctctgacagttgactccaacgcatattaatatcctactttttattacttaagctgatgttcttgtgaatttcttattgtag
species | Physcomitrella patens |
transcript | PP1S12_178V6.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|162234487|gb|FC409518.1|FC409518
genomic: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: TACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|37847723|gb|BJ605731.1|BJ605731
genomic: TACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: AAAGACGAAGTTGAAACC CCGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTEST: gi|162231381|gb|FC406804.1|FC406804
genomic: AAAGACGAAGTTGAAA-Cgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGT
EST: TCAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|162272001|gb|FC448419.1|FC448419
genomic: TCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|162272000|gb|FC448418.1|FC448418
genomic: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|37846424|gb|BJ604432.1|BJ604432
genomic: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTGEST: gi|162192790|gb|FC369628.1|FC369628
genomic: GTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
EST: CAAAGGCTACTACAAAGACGAAGTTGAAAC ACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
genomic: CAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttca ... cttattgtagACGGGAAATTTTTGATGAAGAAGGATGGTTACATACTGGCGATATTGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGGAGTACACAGATAATGACAAGCCTTATCCTCGAGGAGAGATTTGTGTGAGAGGACCCATATTATTCAAAGGCTACTACAAAGACGAAGTTGAAACgtagatttcatgttctcttcacgcgtctttggatatacgttgtcatacctaagtatcttcgatgatttgaattgtgaacctctgacagttgactccaacgcatattaatatcctactttttattacttaagctgatgttcttgtgaatttcttattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA