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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCATTGTGGGGAGGCATTTGGAGGTTGATCTGAATGCAATTGAAATCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtctggtcgggcattctaggctttctcgcaagttgagacgcttcctttaacgcgtgatttgggagtgtatttcgtggcacaatgtgatgggcct...

Basic information

species Physcomitrella patens
transcript PP1S9_318V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100443994|gb|BY982222.1|BY982222
EST:     TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
EST: gi|67576346|gb|BJ949170.1|BJ949170
EST:     CTGCCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: CTG-CTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
EST: gi|208349770|gb|DC905894.1|DC905894
EST:     TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
EST: gi|162160287|gb|FC336573.1|FC336573
EST:     TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
EST: gi|18332321|gb|BJ164334.1|BJ164334
EST:     TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
EST: gi|67568989|gb|BJ941813.1|BJ941813
EST:     TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAG                         GGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG
genomic: TCTGCTCCAGAACGTGCATTGTTCCTGCACGCCTACGTATGCATCAAAAGgtttgtgtct ... aattttgcagGGACTTGCTATCATTGTGATTTAAATCATCACGTGGTAGAAAGCCTACGGG