1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAGgtctgtgaattgactcatctgtcattttcgatgcattcgttccattgactcaatactcagcttcggtgccctcttggagttctgaggatgttccgttgttttgggtgagtgcag
species | Physcomitrella patens |
transcript | PP1S9_234V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAGEST: gi|37823355|gb|BJ581421.1|BJ581421
genomic: TGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
EST: CCCTGGCTCATGTGAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAGEST: gi|18341786|gb|BJ173821.1|BJ173821
genomic: CCCTGGCTCATGTGAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
EST: GCTCATGTGAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAGEST: gi|162255475|gb|FC431889.1|FC431889
genomic: GCTCATGTGAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
EST: TGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAGEST: gi|37828323|gb|BJ586335.1|BJ586335
genomic: TGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
EST: GGCTCATGTGAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGGTCAGGTCGTTCTCCAGEST: gi|18336785|gb|BJ168808.1|BJ168808
genomic: GGCTCATGTGAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAA-GTCAGGTCGTTCTCCAG
EST: GAAGAGCCACTTACAG ATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
genomic: GAAGAGCCACTTACAGgtctgtgaat ... gtgagtgcagATGTATCGGACTGTGAAAACTTCCGACAAGTCAGGTCGTTCTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAGgtctgtgaattgactcatctgtcattttcgatgcattcgttccattgactcaatactcagcttcggtgccctcttggagttctgaggatgttccgttgttttgggtgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA