1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATACGGGTTGTGGAACTGCGGGAATTTCCTTGAAATCCGTAAAGTTTTCAAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatttcccttgggcctcaaaccaggatacgaactgtacatgtcatgcaggaagttttggtcataaatctagagcctatttaactgtagccatta...
species | Physcomitrella patens |
transcript | PP1S90_44V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAG GTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAAEST: gi|100442488|gb|BY963182.1|BY963182
genomic: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatt ... tactatgcagGTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAA
EST: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAG GTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAAEST: gi|18356393|gb|BJ188452.1|BJ188452
genomic: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatt ... tactatgcagGTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAA
EST: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAG GTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAAEST: gi|18347903|gb|BJ179950.1|BJ179950
genomic: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatt ... tactatgcagGTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAA
EST: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAG GTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAA
genomic: AAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatt ... tactatgcagGTGACCTATTGAGAATTGGTCGTCATAGTCGTCATCTCCAGGTCCGTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATACGGGTTGTGGAACTGCGGGAATTTCCTTGAAATCCGTAAAGTTTTCAAAGCAGCTCACGGATCCGACAGGACTGAATCGCCCACAAGCGTTGACAGgtacttcatttcccttgggcctcaaaccaggatacgaactgtacatgtcatgcaggaagttttggtcataaatctagagcctatttaactgtagccatta
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA