1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTTGTTCCTCGAAGGACGCAGATAATATGCCCGCAGCTTCAAGTTCTTCCTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactccgaggatgttcggtttctattacgtttgttgtggataggattgcttctccttttgaatagttaggcccaattcattttctttcagggagaagatgtttcgtttctttatccattgcgttttccgttccgccctctacttttcctggttctgatcattcgtgtaagaaaaccttctttcgtacag
species | Physcomitrella patens |
transcript | PP1S90_220V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|162169383|gb|FC345739.1|FC345739
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|162152901|gb|FC329203.1|FC329203
genomic: CCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: TGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|162186918|gb|FC362596.1|FC362596
genomic: TGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|18327758|gb|BJ159761.1|BJ159761
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|67575766|gb|BJ948590.1|BJ948590
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|67717954|gb|BJ968213.1|BJ968213
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTAEST: gi|162193418|gb|FC368917.1|FC368917
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
EST: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAG GAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
genomic: CTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactc ... tttcgtacagGAGGGCAATGTTTTTGCAGTTCGAGCATCCACTACAACAGACACAGATGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTTCCTCGAAGGACGCAGATAATATGCCCGCAGCTTCAAGTTCTTCCTAATGCCTTGAAGAGTCTCCAACCTGGACATGGACTGAAGAGGTTGAAGgtaattactccgaggatgttcggtttctattacgtttgttgtggataggattgcttctccttttgaatagttaggcccaattcattttctttcagggagaagatgtttcgtttctttatccattgcgttttccgttccgccctctacttttcctggttctgatcattcgtgtaagaaaaccttctttcgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG