Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCATGGAACACACGAGTACCATCAGTACACTCTCGACAGTCTGCGACAGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagctttcctcgacgtgtctttagatggatgcaagtttatgagtttgaagtgctggcgacttgtaactatctagatggagaggtgcttggaacct...

Basic information

species Physcomitrella patens
transcript PP1S90_134V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18363008|gb|BJ195080.1|BJ195080
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGAT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGAT
EST: gi|18372531|gb|BJ204133.1|BJ204133
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: gi|18366005|gb|BJ198083.1|BJ198083
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAG
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAG
EST: gi|100424327|gb|BY958429.1|BY958429
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: gi|18360443|gb|BJ192505.1|BJ192505
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: gi|67574551|gb|BJ947375.1|BJ947375
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
EST: gi|18358297|gb|BJ190356.1|BJ190356
EST:     AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAG                         GGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT
genomic: AGGCCTGCATTAACACGCAAACGATGTGTGCGGTTCTTCTGGATACCAAGgtatagagct ... atcatgatagGGTCCCGAGATTAGAACAGGGCAGCTTGCAGCTGGTAAACCCATTCAACTT