Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAGTATTACTCGGATGACTGGCCTAAGCTTGCTGATAAATTGGCGTATGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatctaagcgttgttaccctctgtatgctgcggccaggcaaatatcatggattaggttttaaagcaatcgtaacgtcctcttgtcggctttacatc...

Basic information

species Physcomitrella patens
transcript PP1S8_105V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18348987|gb|BJ181036.1|BJ181036
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|19790513|gb|BQ041913.1|BQ041913
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|208382534|gb|DC919758.1|DC919758
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|162221832|gb|FC398399.1|FC398399
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|22491811|gb|BU051734.1|BU051734
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|18339333|gb|BJ171360.1|BJ171360
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|162222858|gb|FC399320.1|FC399320
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|208348631|gb|DC905868.1|DC905868
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|162221833|gb|FC398400.1|FC398400
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|18363484|gb|BJ195556.1|BJ195556
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTC
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTC
EST: gi|22492703|gb|BU052626.1|BU052626
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|37840617|gb|BJ598625.1|BJ598625
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|37834059|gb|BJ592071.1|BJ592071
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|162222859|gb|FC399321.1|FC399321
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|7286949|gb|AW599436.1|AW599436
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|67507871|gb|BJ940747.1|BJ940747
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
EST: gi|37835955|gb|BJ593967.1|BJ593967
EST:     TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAG                         CTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG
genomic: TGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 32 (downstream exon)
Score: 11

GTTAAGTATTACTCGGATGACTGGCCTAAGCTTGCTGATAAATTGGCGTATGAGAAATCCGTGTTCACGAAAACCCAACGCTCGATTGCCCGCTCAGAAGgtatgatcta ... ttttttgcagCTGAGATTGGAATGTTTGATGGATATATTGTGGTCTACAAGTTCATCTCAGACCTCCATTTCTATGTCACGGGAGGTGAGGATGAGAACGAACTGATTGT




<











<


<