1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTAGAGCATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgcttttcaaagtagctatgctcagcctgctaattactcgcatcctttcattacgggcggagtcaaagacatggtttagagttgaattttatggtgattaatggaaggatgcttagattgcaaggtgactaattacctcagcaagctaacagttcattatgactcttggttgggttgaaacag
species | Physcomitrella patens |
transcript | PP1S88_179V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|18366058|gb|BJ198136.1|BJ198136
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|18360144|gb|BJ192206.1|BJ192206
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|100390413|gb|BY952821.1|BY952821
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|100411805|gb|BY992350.1|BY992350
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|208388887|gb|DC932915.1|DC932915
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|67569682|gb|BJ942506.1|BJ942506
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|162168511|gb|FC344448.1|FC344448
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCATEST: gi|162154645|gb|FC331583.1|FC331583
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
EST: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAG CCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
genomic: CATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgctt ... gttgaaacagCCTGTGAAGTGCCCTGTTACTATATGCGGAGACATACACGGCCAGTTCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAGAGCATTGTGCGAGAAGGCGAAGGAGATCTTGATGGAAGAGAACAATGTTCAGgtttgtgcttttcaaagtagctatgctcagcctgctaattactcgcatcctttcattacgggcggagtcaaagacatggtttagagttgaattttatggtgattaatggaaggatgcttagattgcaaggtgactaattacctcagcaagctaacagttcattatgactcttggttgggttgaaacag
- - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA