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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGTGGCCGATGCTTGTCGTCGAATGGCCACCCGACGGGTGGATGCTGCTTTACTCACCGATTCTAGTGCGCTCCTTTGTGGAATTATCACGGACAAGgtgaggttcatcatcttatttttagatttttaagctttgactttccgagttgctacagttgctgcagttgagatgtgagaagtacagcttcatctgttgt...

Basic information

species Physcomitrella patens
transcript PP1S87_48V6.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S87_48V6.4 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ25849 (Selaginella moellendorffii), 5'ss of exon 2
TACTGTGGCCGATGCTTGTCGTCGAATGGCCACCCGACGGGTGGATGCTGCTTTACTCACCGATTCTAGTGCGCTCCTTTGTGGAATTATCACGGACAAGgtgaggttcatcatcttatttttagatttttaagctttgactttccgagttgctacagttgctgcagttgagatgtgagaagtacagcttcatctgttgt
 ||||| ||||||||||| || || |||| |||| | || ||||||||||| || ||||| ||||| | |||  | ||||| || |||||||||||||| || ||     || |||| |||||   ||||||   |||  || |        |  |||                                          
CACTGTAGCCGATGCTTGCCGGCGGATGGTCACCAGGCGAGTGGATGCTGCGTTGCTCACGGATTCCACTGCAATGCTTTGCGGGATTATCACGGACAAAgtaagtggtgtc-tcttctttttctctttttatagtttttctcttttgacatcggcag------------------------------------------

upper sequence: PP1S87_48V6.4 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ12244 (Selaginella moellendorffii), 5'ss of exon 2
TACTGTGGCCGATGCTTGTCGTCGAATGGCCACCCGACGGGTGGATGCTGCTTTACTCACCGATTCTAGTGCGCTCCTTTGTGGAATTATCACGGACAAGgtgaggttcatcatcttatttttagattttta-agctttgactttccgagttgctacagttgctgcagttgagatgtgagaagtacagcttcatctgttgt
 ||||| ||||||||||| || || |||| |||| | || ||||||||||| || ||||||||||| | |||  | ||||| || |||||||||||||| || ||     || |||| |||||   |||||| || |||    ||  ||  |||                                               
CACTGTAGCCGATGCTTGCCGCCGGATGGTCACCAGGCGAGTGGATGCTGCGTTGCTCACCGATTCCACTGCAATGCTTTGCGGGATTATCACGGACAAAgtaagtggtgtc-tcttctttttctctttttatagtttttctcttttgacatgcag---------------------------------------------