1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCCTTTGTCCATCACCGATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatctttttagagtcatttaataggagttttttcgtttcgtctggacctaatttacgagttccttttatatttggccccagctccactatggatcgatagtgcggaccatgaaatggttcattaacccgctgcatttcctttttaag
species | Physcomitrella patens |
transcript | PP1S84_76V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100415542|gb|BY992893.1|BY992893
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|162196647|gb|FC374937.1|FC374937
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|208360694|gb|DC930491.1|DC930491
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|67577989|gb|BJ950156.1|BJ950156
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAEST: gi|208363461|gb|DC939708.1|DC939708
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTA
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100429013|gb|BY977896.1|BY977896
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTCCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100416557|gb|BY975446.1|BY975446
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|208376666|gb|DC932130.1|DC932130
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100407545|gb|BY991747.1|BY991747
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|208356936|gb|DC942682.1|DC942682
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100372584|gb|BY948605.1|BY948605
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100379968|gb|BY968780.1|BY968780
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: TTTGGCCTTACCACCCCAG-CATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100394488|gb|BY972090.1|BY972090
genomic: TTTGGCCTTACCACCC-AGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100371232|gb|BY986003.1|BY986003
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100405446|gb|BY955529.1|BY955529
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|208362206|gb|DC939630.1|DC939630
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100382155|gb|BY969020.1|BY969020
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGGEST: gi|100451701|gb|CJ974898.1|CJ974898
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
EST: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAG GGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
genomic: ATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatcttttt ... cctttttaagGGTGTTCCTGGAGCTTACAGTGAAGCAGCTGCTGCTAAAGCATATCCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTTTGTCCATCACCGATTTGGCCTTACCACCCAGGCATGGATCTGATTTACGTGTAGCTTATCAGgtatctttttagagtcatttaataggagttttttcgtttcgtctggacctaatttacgagttccttttatatttggccccagctccactatggatcgatagtgcggaccatgaaatggttcattaacccgctgcatttcctttttaag
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