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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGTTTGAATTGTATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgcccaacatgtctcatcttgaggaaaatcttagtagtcttgatagtctttgcgatgattacgaaggtgataaggttattcagcttgaattgtttcttgcaaaactacgttagacattcgtttacaactactacaatatccatgatgcag

Basic information

species Physcomitrella patens
transcript PP1S82_30V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374665|gb|DC931990.1|DC931990
EST:     ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGAT                         GCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
genomic: ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgccc ... catgatgcagGCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
EST: gi|100426566|gb|BY977294.1|BY977294
EST:     ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGAT                         GCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
genomic: ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgccc ... catgatgcagGCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
EST: gi|18331006|gb|BJ163012.1|BJ163012
EST:     ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGAT                         GCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
genomic: ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgccc ... catgatgcagGCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
EST: gi|162228506|gb|FC404130.1|FC404130
EST:     ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGAT                         GCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
genomic: ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgccc ... catgatgcagGCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
EST: gi|18326763|gb|BJ158763.1|BJ158763
EST:     ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGAT                         GCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC
genomic: ATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAGTCCTTATTGATgtaagtgccc ... catgatgcagGCAGCGTCTAATGAGGCAGCAGATAAGATGGAGCGTGCATTTCTACAAATC