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AATTCAAACAATGGGTTCCACGAGTAAGGTATCCGCAGGAGACGGTGGTGCCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcccaagtcgtggaatgggctcttacgaaacagggtttgatgttgagcgacttggtgatatttgcagtcttttcgcaccgatcgggcgtcgtt...
species | Physcomitrella patens |
transcript | PP1S81_165V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|18361584|gb|BJ193650.1|BJ193650
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|67569904|gb|BJ942728.1|BJ942728
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|18343450|gb|BJ175488.1|BJ175488
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|18370295|gb|BJ201897.1|BJ201897
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|100387189|gb|BY970333.1|BY970333
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACCTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAGEST: gi|18343427|gb|BJ175465.1|BJ175465
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
EST: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCG ACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
genomic: CCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcc ... tcgtggacagACATACGAAAATCCATTGAAGCACAATCCAGCATACGCGGCCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCAAACAATGGGTTCCACGAGTAAGGTATCCGCAGGAGACGGTGGTGCCGTACTTGAAGATGTACCGCACCTTACTGACTGGCTTCCCGACCTGCCGgtaatcatcccaagtcgtggaatgggctcttacgaaacagggtttgatgttgagcgacttggtgatatttgcagtcttttcgcaccgatcgggcgtcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG