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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattcttggtagtcaaattgacggagtgagtgatgtatatcagtcgttgttgactctctgctattacatatcaaaacttaaatacgtttgactttcagggtgcacccagtgtaatctatgtgctaccttggtccttgcag

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 1
CATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattcttggtagtcaaattgacggagtgagtgatgtatatcagtcgttgttgactctctgctattacatatcaaaacttaaatacgtttgactttcagggtgcacccagtgtaatctatgtgctaccttggtccttgcag
|||||| |||||||| ||||| ||||| |||||||||||| |||| || |||||| | |||   || || || || ||| |    ||    ||||||||||| | ||||||  |  |     |       |||        | | ||   |||||     || | |  | | |  |     |    |   ||| | |||  |  ||                                      
CATGGCGCGCAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCAAGGAGCACCTCAAGCGCCTCGCCGGTATCGACCTCCAGATCCTCTCCGCCCAGgttcgattctttcttcttcttcttct----tgatctcaaagttttagcttttgtt-----tccggtgatccctggctggtttggcgttt-tttcatttttggcctgattt----------------------------------

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 1
CATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattcttggtagtcaaattgacggagtgagtgatgtatatcagtcgttgttgactctctgctattacatatcaaaacttaaatacgtttgactttcagggtgcacccagtgtaatctatgtgctaccttggtccttgcag
|||||| |||||||| ||||| ||||| |||||||||||| |||| || |||||| | |||   || || || || ||| |    ||    ||||||||||| | |||||   |  |     |  |    |||        | | ||  ||||||  |  |   |  |      |     |||   | | |||   |||  ||                                         
CATGGCGCGCAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCAAGGAGCACCTCAAGCGCCTCGCCGGTATCGACCTCCAGATCCTCTCCGCCCAGgttcgattctctcttcttcttctt-cttcttgatctcaaagttttagctgttgtttccggtgatccctggttggttggcgcttt--ttcatttttttttttgg-----------------------------------------

upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 1
CATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgt--gctattcttggtagtcaaattgacggagtgagtgatgtatatcag-tcgttgttgactctctgctatt-acatatcaaaacttaaatacgtttgactttcagggtgcacccagtgtaatctatgtgctaccttggtccttgcag
|||||| |||||||| ||||| ||||| |||||||||||| |||| |  |||||| | |||   || || ||||| ||| |  ||||    |||||||||||  |    ||   || | |    |  |           | | | || |  ||  |||  ||||| ||  |  |  | ||      |     || || || |                                              
CATGGCGCGCAAGAAGATCCGGGAGTACGACTCCAAGCGCCTCCTCAGGGAGCACCTCAAGCGCCTCGCCGGCATCGACCTCACCATCCTCTCCGCCCAGgtcagtccgtccgcgtcgcctccctccctcc-caccccctttctgtctgaccggcgttc-ctctccgcactggatctgtcgccgtgttgtctcggttcacgt----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575552|gb|BJ948376.1|BJ948376
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100446463|gb|CJ970762.1|CJ970762
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208390242|gb|DC942007.1|DC942007
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|18370458|gb|BJ202060.1|BJ202060
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100402225|gb|BY973279.1|BY973279
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|162223608|gb|FC399420.1|FC399420
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100449226|gb|CJ973525.1|CJ973525
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100450295|gb|CJ974191.1|CJ974191
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100353250|gb|BY964711.1|BY964711
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67716523|gb|BJ966783.1|BJ966783
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208357950|gb|DC943062.1|DC943062
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100412106|gb|BY956417.1|BY956417
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208354657|gb|DC934301.1|DC934301
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208360044|gb|DC934933.1|DC934933
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|162274023|gb|FC450370.1|FC450370
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100421795|gb|BY993647.1|BY993647
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67703099|gb|BJ963332.1|BJ963332
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGCCTTTACCAAACTAGCCGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208363910|gb|DC939559.1|DC939559
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100424973|gb|BY976908.1|BY976908
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208352142|gb|DC906273.1|DC906273
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|18361927|gb|BJ193994.1|BJ193994
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100392847|gb|BY971911.1|BY971911
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100447685|gb|CJ971984.1|CJ971984
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100383551|gb|BY950335.1|BY950335
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100388158|gb|BY988631.1|BY988631
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100437573|gb|BY979720.1|BY979720
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208390935|gb|DC942239.1|DC942239
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208361725|gb|DC934965.1|DC934965
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100391526|gb|BY971701.1|BY971701
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100405539|gb|BY973727.1|BY973727
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208346716|gb|DC913362.1|DC913362
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67716406|gb|BJ966666.1|BJ966666
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208375943|gb|DC914410.1|DC914410
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100386816|gb|BY988085.1|BY988085
EST:     AGCACTTGAAGAAGCTTGATGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208391473|gb|DC937621.1|DC937621
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACCTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208372285|gb|DC936443.1|DC936443
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208353244|gb|DC913918.1|DC913918
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100448570|gb|CJ972869.1|CJ972869
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67701897|gb|BJ962130.1|BJ962130
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208393881|gb|DC938464.1|DC938464
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208358324|gb|DC930709.1|DC930709
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67578178|gb|BJ950345.1|BJ950345
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|18366063|gb|BJ198141.1|BJ198141
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100420571|gb|BY976074.1|BY976074
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100360822|gb|BY965918.1|BY965918
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67704574|gb|BJ964807.1|BJ964807
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|162203673|gb|FC378548.1|FC378548
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100383470|gb|BY950254.1|BY950254
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208386794|gb|DC937186.1|DC937186
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100405432|gb|BY955522.1|BY955522
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|18331338|gb|BJ163348.1|BJ163348
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208391423|gb|DC937571.1|DC937571
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67704359|gb|BJ964592.1|BJ964592
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAA
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAA
EST: gi|208366691|gb|DC931348.1|DC931348
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67508690|gb|BJ941551.1|BJ941551
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|67703488|gb|BJ963721.1|BJ963721
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208355278|gb|DC929767.1|DC929767
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|208355422|gb|DC929841.1|DC929841
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAG                         GTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG
genomic: AGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattct ... gtccttgcagGTGACCGAGAGCACAGACTTTACCAAACTAGCTGAACAGGAACCATGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCAGgtgctattcttggtagtcaaattgacggagtgagtgatgtatatcagtcgttgttgactctctgctattacatatcaaaacttaaatacgtttgactttcagggtgcacccagtgtaatctatgtgctaccttggtccttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC