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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGTTAGGGTTTTGTGGCGTGAAGGAGAGAGGAGCACTTATGACAACAGAACACTCATCAACGCCGACCATGTCCGCTTTCATTATCGGCGGCACTGgtacattctccataaaatcattatacttcaatgtagaatatctagccgttgctaaatttttctccagcccatcaacattggatttataaggtggctgttt...

Basic information

species Physcomitrella patens
transcript PP1S79_8V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162275013|gb|FC450872.1|FC450872
EST:     CATTATCGGCGGCACTG                         GGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA
genomic: CATTATCGGCGGCACTGgtacattctc ... tggacttcagGGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA
EST: gi|18367107|gb|BJ199187.1|BJ199187
EST:     AGAACACTCATCAACGCCGACCATGTCCGCTTTCATTATCGGCGGCACTG                         GGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA
genomic: AGAACACTCATCAACGCCGACCATGTCCGCTTTCATTATCGGCGGCACTGgtacattctc ... tggacttcagGGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA
EST: gi|208394896|gb|DC920183.1|DC920183
EST:     AGAACANTCATCAACGCCGACCATGTCCGCTTTCATTATCGGCGGCACTG                         GGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA
genomic: AGAACACTCATCAACGCCGACCATGTCCGCTTTCATTATCGGCGGCACTGgtacattctc ... tggacttcagGGATGGTGGGTAGGAAGCTTGTTGCGGAACTCTCGCAATCCGACCACTTCA