1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACGGGGAAGACCATGCTTGCTAAGGCTGTTGCTCATCACACGACTGCAGCTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattccttttacgtcatcccccgaccctcgggggaggagtgatttttattctaaaaatttcgttctctaattgcctggcctaatttgaatgatcac...
species | Physcomitrella patens |
transcript | PP1S79_171V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTCATTCGTGTGGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|208380173|gb|DC927452.1|DC927452
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|37838326|gb|BJ596334.1|BJ596334
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|18360609|gb|BJ192672.1|BJ192672
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|208365017|gb|DC943354.1|DC943354
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|162254099|gb|FC429623.1|FC429623
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCEST: gi|208396378|gb|DC920058.1|DC920058
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGC
EST: CTTTCATTCGTGTTGTCGGTTNTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|18369533|gb|BJ201620.1|BJ201620
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCAEST: gi|67578343|gb|BJ950510.1|BJ950510
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
EST: CTTTCATTCNTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAG GGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
genomic: CTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattcc ... tttgtcatagGGTCCCCGCATGGTACGTGACGTATTCCGACTGGCAAAGGAGAATGCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGGGGAAGACCATGCTTGCTAAGGCTGTTGCTCATCACACGACTGCAGCTTTCATTCGTGTTGTCGGTTCTGAGTTCGTGCAGAAATATCTTGGAGAGgtaggattccttttacgtcatcccccgaccctcgggggaggagtgatttttattctaaaaatttcgttctctaattgcctggcctaatttgaatgatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA