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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCACCAGACGTCGAACCTTCATTAGAAGTGACACAGTTCTCGGACGAATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagaggtttctcatcttgcacttcctccttattcgtagtggttcactgaccttggtctcagtccgtgactgggatcgccttagtccgagtaccaaa...

Basic information

species Physcomitrella patens
transcript PP1S78_6V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162201050|gb|FC378181.1|FC378181
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTATATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|18329265|gb|BJ161271.1|BJ161271
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|162201051|gb|FC378182.1|FC378182
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTATATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|162274901|gb|FC450552.1|FC450552
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|37825069|gb|BJ583135.1|BJ583135
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|18332695|gb|BJ164708.1|BJ164708
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
EST: gi|162274902|gb|FC450553.1|FC450553
EST:     AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAG                         TTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA
genomic: AATCCAACGACTCCACTTTCCACTTTCAGATTCTGCGGTTGACTAATCAGgtgtgagagg ... agttcaacagTTGTATGTTTGGATTGGGTGCAATTCCGCTCGTATGGGAAATTTATATGCA