1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCTCAGCTAGGATTGCCTATTGCGGCCTATTTGCTTTGTCACTTATTGTTTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttactcattcccgtacttctgaacctcggttgtagcctgtctgaatgtttctgtatttgttttgtcatcaaattcagttcatatggttagtgttttgacgtttttctttcttcgatag
species | Physcomitrella patens |
transcript | PP1S78_51V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|100377096|gb|BY968361.1|BY968361
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|67569551|gb|BJ942375.1|BJ942375
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162159385|gb|FC335173.1|FC335173
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: GCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162259610|gb|FC436473.1|FC436473
genomic: GCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|208374347|gb|DC941160.1|DC941160
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|100447063|gb|CJ971362.1|CJ971362
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|208357565|gb|DC934073.1|DC934073
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162272333|gb|FC449011.1|FC449011
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|100366190|gb|BY967324.1|BY967324
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|18355465|gb|BJ187524.1|BJ187524
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|208350208|gb|DC901592.1|DC901592
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162190510|gb|FC365732.1|FC365732
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|100438163|gb|BY961685.1|BY961685
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|208389023|gb|DC937356.1|DC937356
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162173089|gb|FC349195.1|FC349195
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|18357289|gb|BJ189348.1|BJ189348
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACGAGEST: gi|100416027|gb|BY957042.1|BY957042
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|18327728|gb|BJ159731.1|BJ159731
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAGEST: gi|162276898|gb|FC452580.1|FC452580
genomic: TTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
EST: TGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCAT GGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
genomic: TGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttact ... tcttcgatagGGATCAACACCTTCACCGACACGCCCAGTCCAGAGTGGTTTGCCACACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCAGCTAGGATTGCCTATTGCGGCCTATTTGCTTTGTCACTTATTGTTTCGTGGCTTCTCCGTGACTTCGCCGGGCCTTTGCTTGCGAAGATACCATgtaagttactcattcccgtacttctgaacctcggttgtagcctgtctgaatgtttctgtatttgttttgtcatcaaattcagttcatatggttagtgttttgacgtttttctttcttcgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA