1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACTGTGTAGTAGAGCTGGAGAAGCACAAGACTGTTGATTCTTTACATTCGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTCgtaagttttcctctgacgtaattaccaaggcaggaatattctgctgaaacgatccagacgctttaatagcgaaggacatatcttcgctctgttgtgcagt...
species | Physcomitrella patens |
transcript | PP1S78_28V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGGGAGCAGCGGAAGTCTTTC TCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTGEST: gi|100422315|gb|BY976314.1|BY976314
genomic: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTCgtaagttttc ... ttgtgagtagTCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTG
EST: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTC TCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTGEST: gi|100363006|gb|BY984310.1|BY984310
genomic: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTCgtaagttttc ... ttgtgagtagTCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTG
EST: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTC TCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTG
genomic: CGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTCgtaagttttc ... ttgtgagtagTCCTCATGGCAGGGTGCATCTCCGCGCCGGCGAAGTGCGTCCATCCGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGTGTAGTAGAGCTGGAGAAGCACAAGACTGTTGATTCTTTACATTCGCCTTCAAGCCTGCGTATCAGCCGGGTTAGAGAGCAGCGGAAGTCTTTCgtaagttttcctctgacgtaattaccaaggcaggaatattctgctgaaacgatccagacgctttaatagcgaaggacatatcttcgctctgttgtgcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG