1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGAAGAGAGGGCCGTGGACGGTCGAAGAGGATCAGAAGCTTGTTTCTTACATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAGgtatacactagtattctcgaaaccctgtgtatgttttctcagtcactccgacgcatagtgtcgaaggtcgacttgctgtttttgagagccttcttgctgaatacattcttgtttgttcgtttgtttgtttggcag
species | Physcomitrella patens |
transcript | PP1S78_152V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAG GATTGTTGCGATGTGGGAAGAGCTGTCGGCTTCGATGGATCAACTACTTGAEST: gi|18353771|gb|BJ185826.1|BJ185826
genomic: CATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAGgtatacacta ... tgtttggcagGATTGTTGCGATGTGGGAAGAGCTGTCGGCTTCGATGGATCAACTACTTGA
EST: CATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAG GATTGTTGCGATGTGGGAAGAGCTGTCGGCTTCGATGGATCAACTACTTGA
genomic: CATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAGgtatacacta ... tgtttggcagGATTGTTGCGATGTGGGAAGAGCTGTCGGCTTCGATGGATCAACTACTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGAGAGGGCCGTGGACGGTCGAAGAGGATCAGAAGCTTGTTTCTTACATCACCAATAATGGCTTGGGATGTTGGCGAGCTACCCCCAAGCTCGCAGgtatacactagtattctcgaaaccctgtgtatgttttctcagtcactccgacgcatagtgtcgaaggtcgacttgctgtttttgagagccttcttgctgaatacattcttgtttgttcgtttgtttgtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT