1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGGTAGCCACGCTGGTAACAAGCTTGCAATGCAAGAGTTTATGATTCTGCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcattatcactatttcttgctgcctttcatcaaaccaattagaagtattaagccatttgttcgtttcgtcttgcttacaagaatacccaaatcct...
species | Physcomitrella patens |
transcript | PP1S76_97V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAG TGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAANATGCGTEST: gi|162174157|gb|FC350360.1|FC350360
genomic: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
EST: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAG TGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGTEST: gi|162166358|gb|FC342340.1|FC342340
genomic: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
EST: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAG TGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGTEST: gi|162214126|gb|FC389964.1|FC389964
genomic: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
EST: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAG TGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGTEST: gi|100361685|gb|BY947771.1|BY947771
genomic: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
EST: CCTGT-GGTGCATCCTCGTTTCA-GGAAGCCATGCAAATGGGGTGTGAAG TGTATCAGGTGCTGAEST: gi|162185552|gb|FC361484.1|FC361484
genomic: C-TGTTGGTGCATCCTCGTT-CAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGA
EST: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAG TGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
genomic: GCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcatt ... ctatggacagTGTATCATGTGCTGAAGGGCATCATCAAGAAGAAGTACGGGCAAGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGTAGCCACGCTGGTAACAAGCTTGCAATGCAAGAGTTTATGATTCTGCCTGTTGGTGCATCCTCGTTCAAGGAAGCCATGCAAATGGGTTGTGAAGgtattgcattatcactatttcttgctgcctttcatcaaaccaattagaagtattaagccatttgttcgtttcgtcttgcttacaagaatacccaaatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA