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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaatatctgctgctttcatttggtgctgttctggtaactgtagggtttgatcaatgaactcttagtttgacgctcaggtttatgagattttct...

Basic information

species Physcomitrella patens
transcript PP1S76_47V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826981|gb|BJ584993.1|BJ584993
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18368465|gb|BJ200550.1|BJ200550
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162158517|gb|FC334520.1|FC334520
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162241774|gb|FC417301.1|FC417301
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTTTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|37844877|gb|BJ602885.1|BJ602885
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162254004|gb|FC430638.1|FC430638
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|15590644|gb|BI675260.1|BI675260
EST:     AGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67572280|gb|BJ945104.1|BJ945104
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162250297|gb|FC425951.1|FC425951
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTTTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162250298|gb|FC425952.1|FC425952
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67698108|gb|BJ958341.1|BJ958341
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|37831299|gb|BJ589311.1|BJ589311
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18351969|gb|BJ184021.1|BJ184021
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|7047040|gb|AW476934.1|AW476934
EST:     TAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: TAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67699358|gb|BJ959591.1|BJ959591
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|15730030|gb|BI741625.1|BI741625
EST:     AACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162218513|gb|FC395090.1|FC395090
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67721677|gb|BJ971936.1|BJ971936
EST:     TCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: TCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162230026|gb|FC405966.1|FC405966
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162229887|gb|FC404340.1|FC404340
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162272151|gb|FC447945.1|FC447945
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162272150|gb|FC447944.1|FC447944
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTTTCGTTTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162199717|gb|FC375956.1|FC375956
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162206524|gb|FC382893.1|FC382893
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67695648|gb|BJ955881.1|BJ955881
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18360386|gb|BJ192448.1|BJ192448
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18325041|gb|BJ157037.1|BJ157037
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|37838526|gb|BJ596534.1|BJ596534
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67574690|gb|BJ947514.1|BJ947514
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162262257|gb|FC437168.1|FC437168
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18360864|gb|BJ192927.1|BJ192927
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162206500|gb|FC382869.1|FC382869
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162206116|gb|FC383109.1|FC383109
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67575874|gb|BJ948698.1|BJ948698
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162220744|gb|FC395513.1|FC395513
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162241775|gb|FC417302.1|FC417302
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|15320128|gb|BI487719.1|BI487719
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|37849823|gb|BJ607831.1|BJ607831
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162241864|gb|FC418119.1|FC418119
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162240244|gb|FC415966.1|FC415966
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162151568|gb|FC327281.1|FC327281
EST:     CTGGGAAGCCCATTGCTAGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: CTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|18374313|gb|BJ205891.1|BJ205891
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|37838753|gb|BJ596761.1|BJ596761
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162265356|gb|FC440474.1|FC440474
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|22492578|gb|BU052501.1|BU052501
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|22132566|gb|BQ827229.1|BQ827229
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67703168|gb|BJ963401.1|BJ963401
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162269168|gb|FC445036.1|FC445036
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|162215229|gb|FC391634.1|FC391634
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|7583043|gb|AW699207.1|AW699207
EST:     GTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: GTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
EST: gi|67578429|gb|BJ950596.1|BJ950596
EST:     AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG                         ATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC
genomic: AGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 69

GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGGgtgagtccaa ... gttactgtagATTCCTCACTTGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCACAAGAAAACTGTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAG




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