1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGGAAAATCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcgaagcataatttggacacgatcatcttgtattaccaactttggctaaatgaagaattctccgggacgagcgagaaatgaggttgttaaacctttagtatacttggactggtggttctgggactgattattactttcctctgcag
species | Physcomitrella patens |
transcript | PP1S76_197V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCTEST: gi|162181631|gb|FC357933.1|FC357933
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCT
EST: TCGTATCTTGCANAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGEST: gi|162154850|gb|FC331892.1|FC331892
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATG
EST: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCCTCT-CAGACTTGGTGTCEST: gi|162149984|gb|FC326515.1|FC326515
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCC-TCTTCAGACTTGGTGTC
EST: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCTEST: gi|208397729|gb|DC911980.1|DC911980
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCT
EST: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCTEST: gi|162196819|gb|FC373887.1|FC373887
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCT
EST: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAG TATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCT
genomic: TCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcg ... tcctctgcagTATTTCCTCTTCAGACTTGGTGTCAAAGTGGATGGGAGAGAGTGAGAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGGAAAATCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATTCTTTAGgtaactgtcgaagcataatttggacacgatcatcttgtattaccaactttggctaaatgaagaattctccgggacgagcgagaaatgaggttgttaaacctttagtatacttggactggtggttctgggactgattattactttcctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT