1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTGGCGTCCGCATTAATGTCACCGAAGCCGTGCACTCTGCCGAGCCTTTCAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcatttcattgacgcagaaagctcgacatgaggaaatcgtcgtcgcaagcatctttctggtctgtaagaaccgctttactgcatctttctcatttgtgggacatggtggcggtgtggttattgcag
species | Physcomitrella patens |
transcript | PP1S76_162V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|208367273|gb|DC939831.1|DC939831
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|100445252|gb|BY982881.1|BY982881
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAANAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|208363633|gb|DC939796.1|DC939796
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|100429999|gb|BY978196.1|BY978196
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAANAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|208360547|gb|DC930847.1|DC930847
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTGEST: gi|100451064|gb|CJ974579.1|CJ974579
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAAAAAG-TTGEST: gi|100428777|gb|BY959428.1|BY959428
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG A-GGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAGGGT-GEST: gi|208364204|gb|DC943432.1|DC943432
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
EST: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAG AAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
genomic: CAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcat ... gttattgcagAAGGTTTGCAGGCAAAGTATTGGTCCCTCAACAGTTGGAGGAATAAGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGCGTCCGCATTAATGTCACCGAAGCCGTGCACTCTGCCGAGCCTTTCAACGCCGTCAAGAAAGTCGAGAAAGAATTTTCAAGCACAGAAAAGAAAGgtgagttcatttcattgacgcagaaagctcgacatgaggaaatcgtcgtcgcaagcatctttctggtctgtaagaaccgctttactgcatctttctcatttgtgggacatggtggcggtgtggttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA