1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAAGGATCAAGCATACGACGCCGCTGCTTCGACTGCCCAGAACACGAAGGATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttcttcttggctttagttatcttaatgtatattgaaatgcattttattcagcttcacttgactaaaacttccaatttaccttggcatctgactattcatgttgttgtgttcggttggtgtag
species | Physcomitrella patens |
transcript | PP1S75_99V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAEST: gi|100398256|gb|BY954167.1|BY954167
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST: GATATGTTAGCTGAGAAAACAAATCAGGCTTCAGATTATGCCGGACAAAC TTACAAAGCTGCAAAAGACAEST: gi|100372642|gb|BY948633.1|BY948633
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACA
EST: TATGTTAGCTGAGAAAACNNAATCA-GCTTCAGATTTATGCCGGACAA-C TTTAC-AAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGEST: gi|162274518|gb|FC450961.1|FC450961
genomic: TATGTTAGCTGAGAAAACA-AATCAAGCTTCAGATT-ATGCCGGACAAACgtaatttctt ... gttggtgtagTT-ACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTG
EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAEST: gi|162256247|gb|FC432303.1|FC432303
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAEST: gi|162266870|gb|FC442997.1|FC442997
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGAEST: gi|100448152|gb|CJ972451.1|CJ972451
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
EST: GATATGTTAGCTGAGAAAACAA-TCANGCTTCAGATTATGCCGGACAA-C TNACNA-GCTGCAAA-GACACGGTCATGGACEST: gi|162255767|gb|FC431427.1|FC431427
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGAC
EST: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAAC TTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
genomic: GATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttctt ... gttggtgtagTTACCAAGCTGCAAAAGACACGGTCATGGACTACACTAATGCCGCAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGATCAAGCATACGACGCCGCTGCTTCGACTGCCCAGAACACGAAGGATATGTTAGCTGAGAAAACAAATCAAGCTTCAGATTATGCCGGACAAACgtaatttcttcttggctttagttatcttaatgtatattgaaatgcattttattcagcttcacttgactaaaacttccaatttaccttggcatctgactattcatgttgttgtgttcggttggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT