1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTTTGTTGCTCGTATTGAAACGGAAGGAGGTGGGTCTGTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttgcaatccctactttagttcgactcattcgtgcgtcccgtcgcagcgatgtttggatatgagtgtgcgggaattttggataccatcatacaa...
species | Physcomitrella patens |
transcript | PP1S72_57V6.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|67569820|gb|BJ942644.1|BJ942644
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|18327364|gb|BJ159366.1|BJ159366
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|100443924|gb|BY982152.1|BY982152
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|162272070|gb|FC447864.1|FC447864
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|208371637|gb|DC932466.1|DC932466
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|208394276|gb|DC904096.1|DC904096
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|208390148|gb|DC941955.1|DC941955
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|18343992|gb|BJ176031.1|BJ176031
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|208357921|gb|DC943047.1|DC943047
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTCEST: gi|18366790|gb|BJ198869.1|BJ198869
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
EST: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGG TACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
genomic: GTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttg ... aggatggcagTACGATTTGTCGGTTACTACTTTCTCTCCGGATGGGCGAGTATTCCAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGTTGCTCGTATTGAAACGGAAGGAGGTGGGTCTGTCGCGGCAAGGCAAGGAAGGTAGCAACCATGACTAGCATTGGAACAGGGgtaggttttgcaatccctactttagttcgactcattcgtgcgtcccgtcgcagcgatgtttggatatgagtgtgcgggaattttggataccatcatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA