1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAACACCTATGGTTTATCTCAATACAGTGGTGGACGGTTGTGTCGCCAACATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttcttcaaatgtcctcaagttttgctacttggtttttgcaacatggctgtaaattctgctcccagtcctatgaaataacctatgaacaagagag...
species | Physcomitrella patens |
transcript | PP1S71_187V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|18330835|gb|BJ162841.1|BJ162841
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTEST: gi|100385278|gb|BY950870.1|BY950870
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATT
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|100409032|gb|BY991846.1|BY991846
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|162171775|gb|FC348951.1|FC348951
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|162184261|gb|FC359683.1|FC359683
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|100363590|gb|BY966464.1|BY966464
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCEST: gi|208349485|gb|DC905623.1|DC905623
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
EST: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAG GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
genomic: ATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttct ... caacgtacagGATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACACCTATGGTTTATCTCAATACAGTGGTGGACGGTTGTGTCGCCAACATTGCGGCCAAGTTGGAGATCATGGAGCCTTGCTGCAGTGTCAAGGATAGgtgtgcttcttcaaatgtcctcaagttttgctacttggtttttgcaacatggctgtaaattctgctcccagtcctatgaaataacctatgaacaagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG