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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAATACGGAGTGGACGAGTCCTACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcgtgcagtgatgtggtagacactacatcaaaaaacgattcatctaactttgagcctgtgacatctgccgaacttcagatgtgtaggcaataa...

Basic information

species Physcomitrella patens
transcript PP1S70_132V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162274271|gb|FC450239.1|FC450239
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGC
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGC
EST: gi|100422093|gb|BY957853.1|BY957853
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
EST: gi|100385644|gb|BY987709.1|BY987709
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGCTCTACGTGGGTCTTGAG
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGCTCTACGTGG-TCTTGAG
EST: gi|208391449|gb|DC937597.1|DC937597
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
EST: gi|100394475|gb|BY972087.1|BY972087
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
EST: gi|100362622|gb|BY947445.1|BY947445
EST:     ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAA                         GCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG
genomic: ACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcg ... atcttggcagGCGCTGACTGTTTACGGAGCTCTACGTGGTCTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCAATACGGAGTGGACGAGTCCTACATGCTGGACGTTCGTGATTCATCAGATTCCAACGTTGCTTACCTTGAAgtaagtgtcgtgcagtgatgtggtagacactacatcaaaaaacgattcatctaactttgagcctgtgacatctgccgaacttcagatgtgtaggcaataa

- - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaac