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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAATGTGGAAACCGTAGAATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatattttcatcatttgcatggcggggtcatgggatatgatagtctggtcttagtaactggtttaaactcataaaatgaaattgcgtgggtgctgtatttgaaagggcagtctccggtttggtgacctgatgaggaactcggtatgccttgacag

Basic information

species Physcomitrella patens
transcript PP1S70_131V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18367071|gb|BJ199151.1|BJ199151
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208355961|gb|DC926680.1|DC926680
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208382824|gb|DC923871.1|DC923871
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18363226|gb|BJ195298.1|BJ195298
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTC
EST: gi|19788683|gb|BQ040855.1|BQ040855
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18360326|gb|BJ192388.1|BJ192388
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67508415|gb|BJ941282.1|BJ941282
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67697597|gb|BJ957830.1|BJ957830
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37841109|gb|BJ599117.1|BJ599117
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18359906|gb|BJ191967.1|BJ191967
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37845648|gb|BJ603656.1|BJ603656
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67574235|gb|BJ947059.1|BJ947059
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208347716|gb|DC912905.1|DC912905
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGANGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGANTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37831694|gb|BJ589706.1|BJ589706
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37844007|gb|BJ602015.1|BJ602015
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67578337|gb|BJ950504.1|BJ950504
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|162261371|gb|FC437804.1|FC437804
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37827495|gb|BJ585507.1|BJ585507
EST:     AATA-AAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18355084|gb|BJ187143.1|BJ187143
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208363816|gb|DC943273.1|DC943273
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18362214|gb|BJ194284.1|BJ194284
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|162245120|gb|FC421594.1|FC421594
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18348203|gb|BJ180250.1|BJ180250
EST:     AATA-AAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18373510|gb|BJ205088.1|BJ205088
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|162261370|gb|FC437803.1|FC437803
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|22492640|gb|BU052563.1|BU052563
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208380989|gb|DC919871.1|DC919871
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|162219183|gb|FC396622.1|FC396622
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67697639|gb|BJ957872.1|BJ957872
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18354876|gb|BJ186935.1|BJ186935
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67695107|gb|BJ955340.1|BJ955340
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|22132696|gb|BQ827292.1|BQ827292
EST:     AATACAAGAACATTAGTTTCCCCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18374183|gb|BJ205761.1|BJ205761
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18365521|gb|BJ197598.1|BJ197598
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208349858|gb|DC905982.1|DC905982
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18357362|gb|BJ189421.1|BJ189421
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|162245687|gb|FC420731.1|FC420731
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18328134|gb|BJ160138.1|BJ160138
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208386273|gb|DC952986.1|DC952986
EST:     ATACAAGAACATTAGTTTCACCGTTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: ATACAAGAACATTAGTTTCACCG-TTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37831484|gb|BJ589496.1|BJ589496
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67574196|gb|BJ947020.1|BJ947020
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18363945|gb|BJ196017.1|BJ196017
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67701220|gb|BJ961453.1|BJ961453
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|67700135|gb|BJ960368.1|BJ960368
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37844741|gb|BJ602749.1|BJ602749
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18336372|gb|BJ168394.1|BJ168394
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|18334356|gb|BJ166373.1|BJ166373
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|208351622|gb|DC910024.1|DC910024
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
EST: gi|37853307|gb|BJ611315.1|BJ611315
EST:     AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAG                         ATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC
genomic: AATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 112

GATTCAATGTGGAAACCGTAGAATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatat ... gccttgacagATCCGGCCACTGTGGAGGCATTACTTCCAGAACACTCAAGGGCTGATTTTCGTGGTGGACAGTAACGACAGAGATCGTGTTGTGGAAGCTAGGGATGAGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCAATGTGGAAACCGTAGAATACAAGAACATTAGTTTCACCGTTTGGGATGTCGGAGGTCAGGACAAGgtatgtatattttcatcatttgcatggcggggtcatgggatatgatagtctggtcttagtaactggtttaaactcataaaatgaaattgcgtgggtgctgtatttgaaagggcagtctccggtttggtgacctgatgaggaactcggtatgccttgacag

- - - - - - - - - - - - - AAGAAC