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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAACGTGGAGACTGTTGAATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttctcaaacgttgttttctcttccgaagtgtttatggtttaccactaggtctttgcagccgcacgcaatggatttagaggtagattcttgtctttatataatgtctgtgcgcacaaatcagatgtgttattgatctttatcgttgatgtttttctttttttttcgcag

Basic information

species Physcomitrella patens
transcript PP1S70_130V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832378|gb|BJ590390.1|BJ590390
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67697161|gb|BJ957394.1|BJ957394
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162278351|gb|FC454229.1|FC454229
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67571610|gb|BJ944434.1|BJ944434
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAAACACTCAGGGTCTTATCTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAA-CACTCAGGGTCTTATCTT
EST: gi|37830446|gb|BJ588458.1|BJ588458
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|22132254|gb|BQ827059.1|BQ827059
EST:     GTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAACCACTCAGGGTCTTATCTTT
genomic: GTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37843625|gb|BJ601633.1|BJ601633
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67508103|gb|BJ940974.1|BJ940974
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162275814|gb|FC451375.1|FC451375
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|18356697|gb|BJ188756.1|BJ188756
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67508075|gb|BJ940946.1|BJ940946
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|208383294|gb|DC907254.1|DC907254
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162203104|gb|FC378499.1|FC378499
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37836257|gb|BJ594265.1|BJ594265
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162230343|gb|FC406907.1|FC406907
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162203103|gb|FC378498.1|FC378498
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|18360567|gb|BJ192630.1|BJ192630
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|18343475|gb|BJ175513.1|BJ175513
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCANGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162194745|gb|FC371592.1|FC371592
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67694960|gb|BJ955193.1|BJ955193
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37833638|gb|BJ591650.1|BJ591650
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37823831|gb|BJ581897.1|BJ581897
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162278350|gb|FC454228.1|FC454228
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|22492401|gb|BU052324.1|BU052324
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37827775|gb|BJ585787.1|BJ585787
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67694966|gb|BJ955199.1|BJ955199
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67571616|gb|BJ944440.1|BJ944440
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37851802|gb|BJ609810.1|BJ609810
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACCCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37838283|gb|BJ596291.1|BJ596291
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162275815|gb|FC451376.1|FC451376
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162276716|gb|FC452710.1|FC452710
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37843693|gb|BJ601701.1|BJ601701
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162239493|gb|FC416827.1|FC416827
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|67697926|gb|BJ958159.1|BJ958159
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|18333899|gb|BJ165915.1|BJ165915
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|18326102|gb|BJ158101.1|BJ158101
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|37845981|gb|BJ603989.1|BJ603989
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162276715|gb|FC452709.1|FC452709
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
EST: gi|162239494|gb|FC416828.1|FC416828
EST:     AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAG                         ATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT
genomic: AATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttct ... tttttcgcagATCCGTCCATTGTGGAGGCATTATTTCCAAAACACTCAGGGTCTTATCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTAACGTGGAGACTGTTGAATACAAGAACATTAGTTTCACTGTGTGGGATGTCGGAGGTCAGGACAAGgtaaatttctcaaacgttgttttctcttccgaagtgtttatggtttaccactaggtctttgcagccgcacgcaatggatttagaggtagattcttgtctttatataatgtctgtgcgcacaaatcagatgtgttattgatctttatcgttgatgtttttctttttttttcgcag

- - - - - - - - - - - - - AAGAAC