1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTCTGTTTTTGAATTGGGCTTTACTTCGGATTTGGGGCAGAAGTCGCGGACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacctttttcaatttcattgcttctggtttggatcctctgactaaatctgtttgagttcgttttcgggttttgactttatgaggctaccggctg...
species | Physcomitrella patens |
transcript | PP1S6_409V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|208348042|gb|DC905365.1|DC905365
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|100430815|gb|BY978411.1|BY978411
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|208391260|gb|DC933521.1|DC933521
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|208373818|gb|DC936589.1|DC936589
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|208360397|gb|DC930778.1|DC930778
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|100379138|gb|BY986594.1|BY986594
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|100416820|gb|BY993105.1|BY993105
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|100417855|gb|BY975687.1|BY975687
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGCEST: gi|162203521|gb|FC380437.1|FC380437
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
EST: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAG CCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
genomic: ACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacc ... tgtgcggcagCCTGTTCTTCAAGCAAGAGATGGAGCTGTCGCTGATAGGTCTGCAGAACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTGTTTTTGAATTGGGCTTTACTTCGGATTTGGGGCAGAAGTCGCGGACTGCGAAGATGATGGGAATATGGGATTCGTTCCTCAATTGGCTCCGCAGgtacgtgacctttttcaatttcattgcttctggtttggatcctctgactaaatctgtttgagttcgttttcgggttttgactttatgaggctaccggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG