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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAAGTGTTTGCCTTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacacggtccagaattgcacctctttgatttcgactttctctttcgtttgccgacaactgtcttgaagaatggctttctgtcgcgttagctctgccgtgctctagtttcacatctctgtggttttgggaagcagtgaagttacggattatttctaataattgagattctttgttctgccag

Basic information

species Physcomitrella patens
transcript PP1S6_398V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162208390|gb|FC384702.1|FC384702
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162155505|gb|FC331495.1|FC331495
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162178312|gb|FC354718.1|FC354718
EST:     CAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: CAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162160190|gb|FC337087.1|FC337087
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100370808|gb|BY948526.1|BY948526
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA