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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGCCATGGAGGCTACCGGCTGGACTGAGGCCGAAGTGTTTGCCTTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacacggtccagaattgcacctctttgatttcgactttctctttcgtttgccgacaactgtcttgaagaatggctttctgtcgcgttagctctgccgtgctctagtttcacatctctgtggttttgggaagcagtgaagttacggattatttctaataattgagattctttgttctgccag

Basic information

species Physcomitrella patens
transcript PP1S6_398V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100378424|gb|BY968590.1|BY968590
EST:     TTGCCCAAGTT-ACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCTAGACATAGCTTA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100389028|gb|BY952232.1|BY952232
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAAGCTGCTCTTGAGG
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGG
EST: gi|100390626|gb|BY971381.1|BY971381
EST:     TTGGCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCATTCTCGGACAG                         GGTTTGCGAAGATTTTCTAAGGGCTGCTCTTGAGGGTCAA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAA
EST: gi|162202961|gb|FC380346.1|FC380346
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100372986|gb|BY949382.1|BY949382
EST:     TGCCCAAGTTTACCGCCTCTTTATTTCAGCA-TCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTTCTAA-GGCTGCTCTTGAGGGTCAAGACATAGCTC
genomic: TGCCCAAGTTTACCGCCTCTTTATT-CAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATT-CTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTC
EST: gi|162162996|gb|FC338178.1|FC338178
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162262874|gb|FC440008.1|FC440008
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100359486|gb|BY984278.1|BY984278
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100418302|gb|BY957354.1|BY957354
EST:     GCCCAAAGTT-ACCGCCTCTTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATTTTCTAAAAGTTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: GCCCAA-GTTTACCGCCTCTTT-ATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100362928|gb|BY947599.1|BY947599
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100389015|gb|BY952219.1|BY952219
EST:     TGCCCCAGTTTACCGCCTCTTTATTCAGNCA-TCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAAGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TGCCCAAGTTTACCGCCTCTTTATTCAG-CAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162176291|gb|FC352748.1|FC352748
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100387014|gb|BY951413.1|BY951413
EST:     TGCCCAAGTTTACGGCCTCTTTATTTCAGCA-TCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TGCCCAAGTTTACCGCCTCTTTATT-CAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100401895|gb|BY973112.1|BY973112
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162193845|gb|FC369227.1|FC369227
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|208372162|gb|DC936940.1|DC936940
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100400571|gb|BY954541.1|BY954541
EST:     TGCCCA-GTTTACCGCCTNCTTTATTCAGCA-TCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTGGAGGGTCAAGACATAGCTCA
genomic: -GCCCAAGTTTACCGCCT-CTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162160190|gb|FC337087.1|FC337087
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162178312|gb|FC354718.1|FC354718
EST:     CAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: CAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100414540|gb|BY992822.1|BY992822
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162155505|gb|FC331495.1|FC331495
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|162208390|gb|FC384702.1|FC384702
EST:     ATGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
EST: gi|100405466|gb|BY955539.1|BY955539
EST:     TGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTNCA-TCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGGTCA-GACATAGCTC
genomic: TGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCT-CAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGG-TCAAGACATAGCTC
EST: gi|100377514|gb|BY986282.1|BY986282
EST:     TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAG                         GGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA
genomic: TTGCCCAAGTTTACCGCCTCTTTATTCAGCAATCTCTCAATCTCGGACAGgcaagtacac ... gttctgccagGGATTGCGAAGATATTCTAAAGGCTGCTCTTGAGGGTCAAGACATAGCTCA