1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGACCTCTACCGCTCTCTGCGTGCGAATGGCACCAAGGGACCCTGCTTACAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatcaccatcgatcactttgaaataacactgcgtatatcgcgatgcccgatgctgtcgagatggaatttcctaaccccaaaattgtggctggattgcag
species | Physcomitrella patens |
transcript | PP1S6_359V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTTEST: gi|18360397|gb|BJ192459.1|BJ192459
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTTEST: gi|162273547|gb|FC449692.1|FC449692
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTTEST: gi|67571549|gb|BJ944373.1|BJ944373
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCANAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTTEST: gi|100391315|gb|BY971595.1|BY971595
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTTEST: gi|100379737|gb|BY949919.1|BY949919
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
EST: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTA GTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
genomic: CAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatca ... tggattgcagGTTCGCGATCCAGAGTTTTTGGATATCCTGGGCTCGTCACCGAAGCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGACCTCTACCGCTCTCTGCGTGCGAATGGCACCAAGGGACCCTGCTTACAAACACTTCTACAGGGCCTGTCGAATCTATTGAAGACTGCAGATTCGTAgtatgcatcaccatcgatcactttgaaataacactgcgtatatcgcgatgcccgatgctgtcgagatggaatttcctaaccccaaaattgtggctggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT