1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATGCCTTATTCTCGGCCGATGCGATCTTGTTCCACATCCGACGACCGGCCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgcacactcctctcataatattcattgtcgtagtcagaaagagaatgaaatgatcatgtttctcactttctgcttgcgagggtccttacaacagaaatggaatctgtttttcgtttgtttgtttgtttttgtttatactttgctaaatggcactttttgatattgagctgttgttttactatcggagcag
species | Physcomitrella patens |
transcript | PP1S6_337V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCA AAACTGGAGTTACCAACGATCGACAGACNAN-TGGGCATCTTEST: gi|208389783|gb|DC938331.1|DC938331
genomic: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgca ... atcggagcagAAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTT
EST: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCA AAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGAEST: gi|100405147|gb|BY955386.1|BY955386
genomic: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgca ... atcggagcagAAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGA
EST: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCA AAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGAEST: gi|100399021|gb|BY990633.1|BY990633
genomic: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgca ... atcggagcagAAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGA
EST: CCAGCTCATAGCCCAAGACAGGACTCTGACACAGGGATTCAATCTCACCA AAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGAEST: gi|100442981|gb|BY963476.1|BY963476
genomic: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgca ... atcggagcagAAACTGGAGTTACCAACGATCGACAGACGAAGTGGGCATCTTGGATTATGA
EST: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCA AAACTGGAGTTACCAACGATCGACAGACGAAG-GGTGCATCTTGGATTATG
genomic: CCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgca ... atcggagcagAAACTGGAGTTACCAACGATCGACAGACGAAGTGG-GCATCTTGGATTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGCCTTATTCTCGGCCGATGCGATCTTGTTCCACATCCGACGACCGGCCAGCTCATAGCCAAAGACAGGACTCTGACACAGGGATTCAATCTCACCAgtacgatgcacactcctctcataatattcattgtcgtagtcagaaagagaatgaaatgatcatgtttctcactttctgcttgcgagggtccttacaacagaaatggaatctgtttttcgtttgtttgtttgtttttgtttatactttgctaaatggcactttttgatattgagctgttgttttactatcggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA