1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggatttattttctggactttgcagttgcctttgcctcatccgtttggtgctgggtttatgatcagtagggtagggttagcttgcctggtgtaccaac...
species | Physcomitrella patens |
transcript | PP1S6_264V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAG CACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGAEST: gi|67507668|gb|BJ940548.1|BJ940548
genomic: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggattta ... gtgtgagcagCACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
EST: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAG CACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGAEST: gi|67578948|gb|BJ951099.1|BJ951099
genomic: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggattta ... gtgtgagcagCACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
EST: ATGCTTGCGACGGGCAGATTACATAGGAGCTCAG CACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGAEST: gi|7147985|gb|AW509907.1|AW509907
genomic: ATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggattta ... gtgtgagcagCACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
EST: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAG CACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGAEST: gi|37831379|gb|BJ589391.1|BJ589391
genomic: TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggattta ... gtgtgagcagCACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
EST: CGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAG CACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
genomic: CGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggattta ... gtgtgagcagCACGGAAACAGAGAGGTATTGAAATCCCTTGTGCGGGAACAATTCAGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTTCGGGAATGCTTGCGACGGGCAGATTACATAGGAGCTCAGgtgggatttattttctggactttgcagttgcctttgcctcatccgtttggtgctgggtttatgatcagtagggtagggttagcttgcctggtgtaccaac
- - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - AGCTCA