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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag

Basic information

species Physcomitrella patens
transcript PP1S69_95V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g51910.1 (Oryza sativa), 5'ss of exon 5
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
                                ||||||| || ||||||||||| ||||| || |||||||| || ||||| || ||||||||||| |||||||        |  |    |  |   ||     | ||  || |  |||    ||||   ||||  |         |  || | ||||| ||                   
-------------------------------ATCACTGGTAAGGCAGTCATGCTTGATGAGATAATCAATTATGTACAGTCACTACAACGTCAAGTTGAGgtactattagggtggtggttcagt---tatttcttggacagttggaatatcactctg---taatctaa-------cacaatctgaacttgcag------------------

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G385543_T01 (Zea mays), 5'ss of exon 5
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
                                |||||||||| ||||||||||||||||| || ||||| || || |||||  | ||||| ||||||||||||               |    |  ||    |  ||||  || |       || ||  | |  || | | ||  |||       | |   | |   |||     ||||||
-------------------------------ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTGCAGTCATTGCAACGACAAGTCGAGgtag-------------tgttagtgcatctgtagctgaat-tgttttggaatatatgtggca--tcttgttagtatatatccagtattctaatacagtttcgagcttgcag

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G092091_T02 (Zea mays), 5'ss of exon 3
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttcca-cattttttttgtgttgcag
                                |||||||||| ||||||||||||||||| || ||||| || || |||||  | ||||| ||||| ||||||               |    |  ||    | |||||  || |  | || || ||    |  || | | ||  |||    |  | ||| |  |   |||     ||||||
-------------------------------ATCACTGGCAAGGCAGTCATGCTCGATGAGATTATCAACTATGTACAGTCATTGCAACGACAAGTGGAGgtag-------------tgatagtgcatctgtagttgaat-tgct--ttggaatatgtgtgacatcttgttagtatatataatccagttctaatacaatttcgaacttgcag

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G101350_T01 (Zea mays), 5'ss of exon 3
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttcta-tacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttt-tgtgttgcag
| ||||||| || || || || ||| |||| ||||| ||||| || | ||||||||| || |||||||| |||||||||||||| ||    |||||||||||||   ||     |  | |||| ||  | ||   |    | |  |   ||  | |    |  | | ||  |  | |     | | ||  ||   | |  ||  | |      
CCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTCGACGAGATCATCAACTACGTCCAGTCCCTGCAGAAGCAAGTCGAGgtaccgaccca--ccggcaccgtcctgcttcatcttccccgcttctcccagctagcca--gctagttattccgcgat----cgctcaccgccgggtctccttgcgcgc-----

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G101350_T02 (Zea mays), 5'ss of exon 3
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttcta-tacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
| ||||||| || || || || ||| |||| ||||| ||||| || | ||||||||| || |||||||| |||||||||||||| ||    |||||||||||||   ||     |  | |||| ||  | ||   |    | |  |   ||  | |    |  | | ||  |  | |     | | ||  ||   | |  || | |  ||||
CCTGCAGGAGCTGGTGCCCGGGTGCAGCAAGGTCACGGGCAAGGCCGGCATGCTCGACGAGATCATCAACTACGTCCAGTCCCTGCAGAAGCAAGTCGAGgtaccgaccca--ccggcaccgtcctgcttcatcttccccgcttctcccagctagcca--gctagttattccgcgat----cgctcaccgccgggtctcctt-gcgc-gcag

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA01G09400.1 (Glycine max), 5'ss of exon 5
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtac--atccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatat---caggttatg-atgttaacttccacattttttttgtgttgcag
                               ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| || || ||||||   ||       |   | || |  |   ||||  |||   |   |  | | | ||| | |      |||   | |||| || | | | | | | | |                 
-------------------------------GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaagcttatctccctattgcccacatgtgattcttaagtcatgtaactgatttgccctgtatgttctggttctgcaagctcagtgcaaaa-----------------

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctca----ttctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatg-ttaacttccacattttttttgtgttgcag
                               ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| || || ||||||        |    || ||  ||  | | | |||   |||   |   |  | | | ||| | |      |||    | ||  || |||| |||   |                 
-------------------------------GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac----------------

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G13860.3 (Glycine max), 5'ss of exon 5
-CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctca----ttctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatg-ttaacttccacattttttttgtgttgcag
  |||       ||  |      |||    | ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| || || ||||||        |    || ||  ||  | | | |||   |||   |   |  | | | ||| | |      |||    | ||  || |||| |||   |                 
CATTGTTTATTATTACTTTCTA-TGCTTTTAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaacttatctccctatttgtccacttgtgattcttaagtcatgtaactgatttgcactgtatattttgattctgcttaagttcagtac----------------

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv03s0038g04760.t01 (Vitis vinifera), 5'ss of exon 3
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttctatacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
  |||| ||  | ||||| || |||  |||  |||| || || || |  ||||||||||||||||||||||| || || || || ||||| ||||| ||||||||   |        |  |  |||  | |||    ||  |   ||||   || |       | ||| |      ||   ||  | ||    |     |||||    |||
TCTGCAAGATTTAGTTCCGGGATGCAACAAGATCACAGGGAAGGCCGGAATGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggccacagactcatcaatcttaatacac---aaaatatagatacacatatatc----tccatgttgctgaattcagtctaattatcgaaccactttgtaa-acag

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ21812 (Selaginella moellendorffii), 5'ss of exon 3
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttct-atacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
                               || ||||| ||||| || ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||        ||  ||  ||  | || | ||||     ||  | |   |  | | || |||  ||                                            
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgtaca------gctcgtcgaagtgttgattctcaat-----gtatttacgcgagttttctttaaaccag-------------------------------------------

upper sequence: PP1S69_95V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ34195 (Selaginella moellendorffii), 5'ss of exon 5
CTTGCAGGACCTTGTTCCTGGCTGCCGCAAAGTCACTGGCAAAGCAGTCATGCTCGATGAAATCATCAATTACGTCCAGTCCCTCCAACGTCAAGTCGAGgtacatccctcattctccgccgttct-atacacaattgaaggtggtgatagggatctgctgtaattcatatcaggttatgatgttaacttccacattttttttgtgttgcag
                               || ||||| ||||| || ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||        ||  ||  ||  | || | || |     ||  | |   |  | | || |||  ||                                            
-------------------------------GTTACTGGAAAAGCCGTGATGCTTGATGAAATCATTAACTACGTCCAGTCGCTCCAGCGTCAAGTTGAGgtaca------gctcgtcgaagtgttgattctcagt-----gtatttacgcgagttttctttaaaccag-------------------------------------------