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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAACACGAGTCATATACGGTGGGTGACTTCATGACACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAGgtatgcaggcataaaggtcctttcttgttttttctcagagagttgtttggttgcttctctaagtttcaattttagatgaattcatttgaagacttgcctagagttagaaagagtaactaaatattaatgggatttcttgcag

Basic information

species Physcomitrella patens
transcript PP1S69_45V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578416|gb|BJ950583.1|BJ950583
EST:     ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAG                         CACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
genomic: ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAGgtatgcaggc ... tttcttgcagCACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
EST: gi|162230981|gb|FC407236.1|FC407236
EST:     ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAG                         CACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
genomic: ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAGgtatgcaggc ... tttcttgcagCACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
EST: gi|162229778|gb|FC405180.1|FC405180
EST:     ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAG                         CACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
genomic: ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAGgtatgcaggc ... tttcttgcagCACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
EST: gi|67699794|gb|BJ960027.1|BJ960027
EST:     ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAG                         CACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG
genomic: ACCTATGACGGAGTTATATTGTGCAACAGAAAACACCACAATAGATGAAGgtatgcaggc ... tttcttgcagCACTAGAGGTCCTTGTCGATAGGCGCATCACTGGGATGCCTGTGGTCGACG