1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCAGGTAGATATGCGACTAGCGCTGAACCACCGAAAGAGCCTGTTACAGGCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAAgtgagtacaattcttctgtgaaactgaagttgctgaagcagcaagtagtcgttgatctcagatggtgtgttgtatcataaacgtcatgcttgctaacacaaagacagctgacgtacacgttacaatagagacatcgttctgtttttcactgagtagttttgcttaataaatcacag
species | Physcomitrella patens |
transcript | PP1S69_37V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAA GACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGTEST: gi|162198484|gb|FC375319.1|FC375319
genomic: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAAgtgagtacaa ... taaatcacagGACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGT
EST: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAA GACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGTEST: gi|162270102|gb|FC446802.1|FC446802
genomic: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAAgtgagtacaa ... taaatcacagGACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGT
EST: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAA GACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGT
genomic: GCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAAgtgagtacaa ... taaatcacagGACATGGAAGACGAGTCTGTGGACACCAAACAAAAACCTGCAACAACCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGGTAGATATGCGACTAGCGCTGAACCACCGAAAGAGCCTGTTACAGGCACGAAAAGGAAGTCAAGCGAAAGAGAAGAACCCGAATGCCAAAGTGAAgtgagtacaattcttctgtgaaactgaagttgctgaagcagcaagtagtcgttgatctcagatggtgtgttgtatcataaacgtcatgcttgctaacacaaagacagctgacgtacacgttacaatagagacatcgttctgtttttcactgagtagttttgcttaataaatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC