1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCCACGCCAACTATGACGTGGTGGTTACAAATGTCACACTGAACCCTGATCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgattttatccgtatgccttcagcagattattgcagtaccttgcattcgattatgcgcttctttgttccgtgactgggtgcgaaggacagcgggttgaacctttcttgtctccagtgtccacgattcctcttagttgtctgcaggattacctgacgtggtgaatggttcttaaacttgcag
species | Physcomitrella patens |
transcript | PP1S69_198V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGA AGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCGEST: gi|162267870|gb|FC444471.1|FC444471
genomic: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgatt ... aaacttgcagAGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
EST: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGA AGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCGEST: gi|67701519|gb|BJ961752.1|BJ961752
genomic: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgatt ... aaacttgcagAGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
EST: CCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGA AGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCGEST: gi|162213663|gb|FC389743.1|FC389743
genomic: CCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgatt ... aaacttgcagAGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
EST: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGA AGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCGEST: gi|162267871|gb|FC444472.1|FC444472
genomic: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgatt ... aaacttgcagAGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
EST: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGA AGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
genomic: TCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgatt ... aaacttgcagAGAGGGATATCACTAAGGCAACTGTGGTTGTAAGTGTGTTGTTTCATGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCACGCCAACTATGACGTGGTGGTTACAAATGTCACACTGAACCCTGATCCCGTTATTAGAGGCCAGGATGTTACTTTTATTGTGCCTGCTACCGCGAgtaagtgattttatccgtatgccttcagcagattattgcagtaccttgcattcgattatgcgcttctttgttccgtgactgggtgcgaaggacagcgggttgaacctttcttgtctccagtgtccacgattcctcttagttgtctgcaggattacctgacgtggtgaatggttcttaaacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG